Gaeta, R., Yoo, S., Pires, J., Chen, Z., & Osborn, T. (2009). Analysis of gene expression in resynthesized Brassica napus allopolyploids using Arabidopsis. Public Library of Science (ONE), 4(3). doi:10.1371/journal.pone.0004760
Riddle, N., Jiang, H., & Birchler, J. (in press). Gene expression analysis at the intersection of ploidy and hybridity. Theoretical and Applied Genetics.
Bremer, M. (2009). The KM-Algorithm identifies genes in time series. Advances in Bioinformatics, 2009(2009), 284251.
Angel, J., Bachmanov, A., Blizard, E. B., Brockmann, G., Casley, W., Bureau, K. B., . . . Manly, K. (in press). A community's view on the nature and identification of quantitative trait loci (QTLs) Nature Genetics Reviews.
Doerge, R. (2003). Differential expression of plant genes during the initial stages of Agrobacterium-mediated transformation. The Plant Journal, 35, 219-236.
Doerge, R. (2003). Intersection tests for Single marker QTL analysis can be more powerful than two marker QTL analysis. BioMed Central (BMC Genetics), 4(10).
Doerge, R. (in press). Interval mapping for autopolyploids. Proceedings of Applied Statistics in Agriculture, Kansas State University.
Doerge, R. (in press). Old Methods for New Ideas: using gene expression levels to molecularly dissect complex traits. The Proceedings of the Stadler Genetics Symposium.
Black, M., Lukens, A., Pires, J., Osborn, T., & Doerge, R. (in press). Sensitivity of 70-mer Oligonucleotides and cDNAs for Microarray analysis of gene expression in arabidopsis and its related species. Plant Biotechnology Journal.
Chen, Z., Doerge, R., & Martienssen, R. (2003). Understanding the causes of novel variation in polyploids. Trends in Genetics, 19(3), 141-147.